CARMIL1

CARMIL1 is a protein that in humans is encoded by the CARMIL1 gene.[5] The gene is also known as LRRC16, LRRC16A, CARMIL, or CARMIL1a.[5]

CARMIL1
Available structures
PDBOrtholog search: PDBe RCSB
Identifiers
AliasesCARMIL1, CARMIL, CARMIL1a, LRRC16, dJ501N12.1, dJ501N12.5, LRRC16A, leucine rich repeat containing 16A, capping protein regulator and myosin 1 linker 1
External IDsOMIM: 609593 MGI: 1915982 HomoloGene: 9757 GeneCards: CARMIL1
Orthologs
SpeciesHumanMouse
Entrez

55604

68732

Ensembl

ENSG00000079691

ENSMUSG00000021338

UniProt

Q5VZK9

Q6EDY6

RefSeq (mRNA)

NM_001173977
NM_017640

NM_026825
NM_177807
NM_001311122
NM_001384122

RefSeq (protein)

NP_001167448
NP_060110

NP_001298051
NP_081101
NP_001371051

Location (UCSC)Chr 6: 25.28 – 25.62 MbChr 13: 24.2 – 24.46 Mb
PubMed search[3][4]
Wikidata
View/Edit HumanView/Edit Mouse

Model organisms

Model organisms have been used in the study of CARMIL1 function. A conditional knockout mouse line, called Lrrc16atm1a(KOMP)Wtsi[10][11] was generated as part of the International Knockout Mouse Consortium program — a high-throughput mutagenesis project to generate and distribute animal models of disease to interested scientists — at the Wellcome Trust Sanger Institute.[12][13][14]

Male and female animals underwent a standardized phenotypic screen to determine the effects of deletion.[8][15] Twenty two tests were carried out on mutant mice but no significant abnormalities were observed.[8]

References
  1. GRCh38: Ensembl release 89: ENSG00000079691 - Ensembl, May 2017
  2. GRCm38: Ensembl release 89: ENSMUSG00000021338 - Ensembl, May 2017
  3. "Human PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
  4. "Mouse PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
  5. "capping protein regulator and myosin 1 linker 1". Retrieved 2020-11-09.
  6. "Salmonella infection data for Lrrc16a". Wellcome Trust Sanger Institute.
  7. "Citrobacter infection data for Lrrc16a". Wellcome Trust Sanger Institute.
  8. Gerdin AK (2010). "The Sanger Mouse Genetics Programme: High throughput characterisation of knockout mice". Acta Ophthalmologica. 88 (S248). doi:10.1111/j.1755-3768.2010.4142.x. S2CID 85911512.
  9. Mouse Resources Portal, Wellcome Trust Sanger Institute.
  10. "International Knockout Mouse Consortium".
  11. "Mouse Genome Informatics".
  12. Skarnes, W. C.; Rosen, B.; West, A. P.; Koutsourakis, M.; Bushell, W.; Iyer, V.; Mujica, A. O.; Thomas, M.; Harrow, J.; Cox, T.; Jackson, D.; Severin, J.; Biggs, P.; Fu, J.; Nefedov, M.; De Jong, P. J.; Stewart, A. F.; Bradley, A. (2011). "A conditional knockout resource for the genome-wide study of mouse gene function". Nature. 474 (7351): 337–342. doi:10.1038/nature10163. PMC 3572410. PMID 21677750.
  13. Dolgin E (June 2011). "Mouse library set to be knockout". Nature. 474 (7351): 262–3. doi:10.1038/474262a. PMID 21677718.
  14. Collins FS, Rossant J, Wurst W (January 2007). "A mouse for all reasons". Cell. 128 (1): 9–13. doi:10.1016/j.cell.2006.12.018. PMID 17218247. S2CID 18872015.
  15. van der Weyden L, White JK, Adams DJ, Logan DW (2011). "The mouse genetics toolkit: revealing function and mechanism". Genome Biol. 12 (6): 224. doi:10.1186/gb-2011-12-6-224. PMC 3218837. PMID 21722353.

Further reading


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