Glycerate kinase
In enzymology, a glycerate kinase (EC 2.7.1.31) is an enzyme that catalyzes the chemical reaction
- ATP + (R)-glycerate ADP + 3-phospho-(R)-glycerate
- or
- ATP + (R)-glycerate ADP + 2-phospho-(R)-glycerate
glycerate kinase | |||||||||
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Identifiers | |||||||||
EC no. | 2.7.1.31 | ||||||||
CAS no. | 9026-61-3 | ||||||||
Databases | |||||||||
IntEnz | IntEnz view | ||||||||
BRENDA | BRENDA entry | ||||||||
ExPASy | NiceZyme view | ||||||||
KEGG | KEGG entry | ||||||||
MetaCyc | metabolic pathway | ||||||||
PRIAM | profile | ||||||||
PDB structures | RCSB PDB PDBe PDBsum | ||||||||
Gene Ontology | AmiGO / QuickGO | ||||||||
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Glycerate kinase | |||||||||||
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Identifiers | |||||||||||
Symbol | Glyc_kinase | ||||||||||
Pfam | PF02595 | ||||||||||
InterPro | IPR004381 | ||||||||||
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Thus, the two substrates of this enzyme are ATP and (R)-glycerate, whereas its two products are ADP and either 3-phospho-(R)-glycerate or 2-phospho-(R)-glycerate.[1]
This enzyme belongs to the family of transferases, specifically those transferring phosphorus-containing groups (phosphotransferases) with an alcohol group as acceptor. The systematic name of this enzyme class is ATP:(R)-glycerate 3-phosphotransferase. Other names in common use include glycerate kinase (phosphorylating), D-glycerate 3-kinase, D-glycerate kinase, glycerate-3-kinase, GK, D-glyceric acid kinase, and ATP:D-glycerate 2-phosphotransferase. This enzyme participates in 3 metabolic pathways: serine/glycine/threonine metabolism, glycerolipid metabolism, and glyoxylate-dicarboxylate metabolism.
This enzyme had been thought to produce 3-phosphoglycerate, but some glycerate kinases produce 2-phosphoglycerate instead.[1]
Structural studies
As of late 2007, 3 structures have been solved for this class of enzymes, with PDB accession codes 1TO6, 1X3L, and 2B8N.
References
- Bartsch, Oliver; Hagemann, Martin; Bauwe, Hermann (2008-09-03). "Only plant-type (GLYK) glycerate kinases produce d-glycerate 3-phosphate". FEBS Letters. 582 (20): 3025–3028. doi:10.1016/j.febslet.2008.07.038. ISSN 0014-5793. PMID 18675808. S2CID 28262946.
- Doughty CC, Hayashi JA, Guenther HL (1966). "Purification and properties of D-glycerate 3-kinase from Escherichia coli". J. Biol. Chem. 241 (3): 568–72. PMID 5325263.
- ICHIHARA A, GREENBERG DM (1957). "Studies on the purification and properties of D-glyceric acid kinase of liver". J. Biol. Chem. 225 (2): 949–58. PMID 13416296.