Alligatoroidea

Alligatoroidea is one of three superfamilies of crocodylians, the other two being Crocodyloidea and Gavialoidea. Alligatoroidea evolved in the Late Cretaceous period, and consists of the alligators and caimans, as well as extinct members more closely related to the alligators than the two other groups.

Alligatoroidea
Temporal range: Late Cretaceous - Recent,
Alligators (shown above) and caimans are living members of the superfamily Alligatoroidea.
Scientific classification Edit this classification
Domain: Eukaryota
Kingdom: Animalia
Phylum: Chordata
Class: Reptilia
Order: Crocodilia
Superfamily: Alligatoroidea
Gray, 1844
Subgroups

Evolution

An alligator nest at Everglades National Park, Florida, United States
A. olseni fore limb
Alligator prenasalis fossil

The superfamily Alligatoroidea is thought to have split from the crocodile-gharial lineage in the late Cretaceous, about 80 million years ago, but possibly as early as 100 million years ago based on molecular phylogenetics.[1][2][3] Leidyosuchus of Alberta is the earliest known genus. Fossil alligatoroids have been found throughout Eurasia as land bridges across both the North Atlantic and the Bering Strait have connected North America to Eurasia during the Cretaceous, Paleogene, and Neogene periods. Alligators and caimans split in North America during the early Tertiary or late Cretaceous (about 53 million[2] to about 65 million years ago[1]) and the latter reached South America by the Paleogene, before the closure of the Isthmus of Panama during the Neogene period. The Chinese alligator split from the American alligator about 33 million years ago[2] and likely descended from a lineage that crossed the Bering land bridge during the Neogene. The modern American alligator is well represented in the fossil record of the Pleistocene.[4] The alligator's full mitochondrial genome was sequenced in the 1990s.[5] The full genome, published in 2014, suggests that the alligator evolved much more slowly than mammals and birds.[6]

Phylogeny

Cladistically, Alligatoroidea is defined as Alligator mississippiensis (the American alligator) and all crocodylians more closely related to A. mississippiensis than to either Crocodylus niloticus (the Nile crocodile) or Gavialis gangeticus (the gharial).[7] This is a stem-based definition for alligators,[8] and is more inclusive than the crown group Alligatoridae.[9] As a crown group, Alligatoridae only includes the last common ancestor of all extant (living) alligators, caimans, and their descendants (living or extinct), whereas Alligatoroidea, as a stem group, also includes more basal extinct alligator ancestors that are more closely related to living alligators than to crocodiles or gavialids. When considering only living taxa (neontology), this makes Alligatoroidea and Alligatoridae synonymous, and only Alligatoridae is used. Thus, Alligatoroidea is only used in the context of paleontology.

Traditionally, crocodiles and alligators were considered more closely related and grouped together in the clade Brevirostres, to the exclusion of the gharials. This classification was based on morphological studies primarily focused on analyzing skeletal traits of living and extinct fossil species.[10] However, recent molecular studies using DNA sequencing have rejected Brevirostres upon finding the crocodiles and gavialids to be more closely related than the alligators.[11][12][13][9][14] The new clade Longirostres was named by Harshman et al. in 2003.[11]

A 2018 tip dating study by Lee & Yates simultaneously using morphological, molecular (DNA sequencing), and stratigraphic (fossil age) data established the inter-relationships within Crocodilia,[9] which was expanded upon in 2021 by Hekkala et al. using paleogenomics by extracting DNA from the extinct Voay.[14]

The below cladogram shows the results of the latest study:

Crocodylia
Alligatoroidea

Leidyosuchus

Diplocynodon

Globidonta

Stangerochampsa

Brachychampsa

Navajosuchus

Alligatoridae
Caimaninae

Caiman

Melanosuchus

Paleosuchus

Alligatorinae

Alligator

(crown group)
(stem-based group)

extinct basal Crocodilians (including Mekosuchinae)

Longirostres
Crocodyloidea

extinct basal crocodiles

Crocodylidae

Crocodylus

Mecistops

Osteolaemus

(crown group)
(stem-based group)
Gavialoidea

extinct basal Gavialoids

Gavialidae

Gavialis

Tomistoma

(crown group)
(stem-based group)
(crown group)
(crown group)

References

  1. Oaks, J.R. (2011). "A time-calibrated species tree of Crocodylia reveals a recent radiation of the true crocodiles". Evolution. 65 (11): 3285–3297. doi:10.1111/j.1558-5646.2011.01373.x. PMID 22023592. S2CID 7254442.
  2. Pan, T.; Miao, J.-S.; Zhang, H.-B.; Yan, P.; Lee, P.-S.; Jiang, X.-Y.; Ouyang, J.-H.; Deng, Y.-P.; Zhang, B.-W.; Wu, X.-B. (2020). "Near-complete phylogeny of extant Crocodylia (Reptilia) using mitogenome-based data". Zoological Journal of the Linnean Society. 191 (4): 1075–1089. doi:10.1093/zoolinnean/zlaa074.
  3. Rio, J. P. & Mannion, P. D. (2021). "Phylogenetic analysis of a new morphological dataset elucidates the evolutionary history of Crocodylia and resolves the long-standing gharial problem". PeerJ. 9: e12094. doi:10.7717/peerj.12094. PMC 8428266. PMID 34567843.
  4. Brochu, Christopher A. (1999). "Phylogenetics, Taxonomy, and Historical Biogeography of Alligatoroidea". Society of Vertebrate Paleontology Memoir. 6: 9–100. doi:10.2307/3889340. JSTOR 3889340.
  5. Janke, A.; Arnason, U. (1997). "The complete mitochondrial genome of Alligator mississippiensis and the separation between recent archosauria (birds and crocodiles)". Molecular Biology and Evolution. 14 (12): 1266–72. doi:10.1093/oxfordjournals.molbev.a025736. PMID 9402737.
  6. Green RE, Braun EL, Armstrong J, Earl D, Nguyen N, Hickey G, Vandewege MW, St John JA, Capella-Gutiérrez S, Castoe TA, Kern C, Fujita MK, Opazo JC, Jurka J, Kojima KK, Caballero J, Hubley RM, Smit AF, Platt RN, Lavoie CA, Ramakodi MP, Finger JW, Suh A, Isberg SR, Miles L, Chong AY, Jaratlerdsiri W, Gongora J, Moran C, Iriarte A, McCormack J, Burgess SC, Edwards SV, Lyons E, Williams C, Breen M, Howard JT, Gresham CR, Peterson DG, Schmitz J, Pollock DD, Haussler D, Triplett EW, Zhang G, Irie N, Jarvis ED, Brochu CA, Schmidt CJ, McCarthy FM, Faircloth BC, Hoffmann FG, Glenn TC, Gabaldón T, Paten B, Ray DA (2014). "Three crocodilian genomes reveal ancestral patterns of evolution among archosaurs". Science. 346 (6215): 1254449. doi:10.1126/science.1254449. PMC 4386873. PMID 25504731.
  7. Brochu, Christopher A. (May 2003). "Phylogenetic approaches toward crocodylian history". Annual Review of Earth and Planetary Sciences. 31 (31): 360. Bibcode:2003AREPS..31..357B. doi:10.1146/annurev.earth.31.100901.141308.
  8. Tobias Massonne; Davit Vasilyan; Márton Rabi; Madelaine Böhme (2019). "A new alligatoroid from the Eocene of Vietnam highlights an extinct Asian clade independent from extant Alligator sinensis". PeerJ. 7: e7562. doi:10.7717/peerj.7562. PMC 6839522. PMID 31720094.
  9. Michael S. Y. Lee; Adam M. Yates (27 June 2018). "Tip-dating and homoplasy: reconciling the shallow molecular divergences of modern gharials with their long fossil". Proceedings of the Royal Society B. 285 (1881). doi:10.1098/rspb.2018.1071. PMC 6030529. PMID 30051855.
  10. Holliday, Casey M.; Gardner, Nicholas M. (2012). Farke, Andrew A (ed.). "A new eusuchian crocodyliform with novel cranial integument and its significance for the origin and evolution of Crocodylia". PLOS ONE. 7 (1): e30471. Bibcode:2012PLoSO...730471H. doi:10.1371/journal.pone.0030471. PMC 3269432. PMID 22303441.
  11. Harshman, J.; Huddleston, C. J.; Bollback, J. P.; Parsons, T. J.; Braun, M. J. (2003). "True and false gharials: A nuclear gene phylogeny of crocodylia" (PDF). Systematic Biology. 52 (3): 386–402. doi:10.1080/10635150309323. PMID 12775527. Archived from the original (PDF) on 2022-10-09. Retrieved 2021-07-20.
  12. Gatesy, J.; Amato, G. (2008). "The rapid accumulation of consistent molecular support for intergeneric crocodylian relationships". Molecular Phylogenetics and Evolution. 48 (3): 1232–1237. doi:10.1016/j.ympev.2008.02.009. PMID 18372192.
  13. Erickson, G. M.; Gignac, P. M.; Steppan, S. J.; Lappin, A. K.; Vliet, K. A.; Brueggen, J. A.; Inouye, B. D.; Kledzik, D.; Webb, G. J. W. (2012). Claessens, Leon (ed.). "Insights into the ecology and evolutionary success of crocodilians revealed through bite-force and tooth-pressure experimentation". PLOS ONE. 7 (3): e31781. Bibcode:2012PLoSO...731781E. doi:10.1371/journal.pone.0031781. PMC 3303775. PMID 22431965.
  14. Hekkala, E.; Gatesy, J.; Narechania, A.; Meredith, R.; Russello, M.; Aardema, M. L.; Jensen, E.; Montanari, S.; Brochu, C.; Norell, M.; Amato, G. (2021-04-27). "Paleogenomics illuminates the evolutionary history of the extinct Holocene "horned" crocodile of Madagascar, Voay robustus". Communications Biology. 4 (1): 505. doi:10.1038/s42003-021-02017-0. ISSN 2399-3642. PMC 8079395. PMID 33907305.
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